Pipelines

• Prediction of Molecular Pathways and Key Mutations
  • About this demo
  • Available models
  • Tumour segmentation using TIAToolbox pretrained models
  • WSI prediction using TIAToolbox pretrained models
• Slide Graph Pipeline
  • Introduction
  • Preparation: Imports, Helpers, & Data Split
  • Fixing Randomness
  • Loading Data
  • Generating a Graph from a WSI
  • Graph Neural Network
  • Visualize Node Activation of Graph Neural Network
• Slide Graph Full-pipeline Notebook
  • About this notebook
  • Introduction
  • Preparation: Imports, Helpers, & Data Split
  • Generating Graphs from WSIs
  • The Graph Neural Network