CustomExtractor¶

class CustomExtractor(stain_matrix)[source]¶

Get the user-defined stain matrix.

This class contains code inspired by StainTools [https://github.com/Peter554/StainTools] written by Peter Byfield.

Examples

>>> from tiatoolbox.tools.stainextract import CustomExtractor
>>> from tiatoolbox.utils import imread
>>> extractor = CustomExtractor(stain_matrix)
>>> img = imread('path/to/image')
>>> stain_matrix = extractor.get_stain_matrix(img)

Initialize CustomExtractor.

Methods

get_stain_matrix

Get the user defined stain matrix.
Parameters:

stain_matrix (np.ndarray)

get_stain_matrix(_)[source]¶

Get the user defined stain matrix.

Returns:

User defined stain matrix.

Return type:

numpy.ndarray

Parameters: