main

tiatoolbox . visualization . bokeh_app . main

Main module for the tiatoolbox visualization bokeh app.

Functions

add_layer	Add a new layer to the visualization.
bind_cb_obj	Wrapper to bind a callback to a bokeh object.
bind_cb_obj_tog	Wrapper to bind a callback to a bokeh toggle object.
blur_spinner_cb	Callback to change the blur radius.
build_predicate	Builds a predicate string.
change_tiles	Update tilesources.
cmap_select_cb	Callback to change the color map.
color_input_cb	Callback to handle changing the color of an annotation type.
control_tabs_cb	Callback to handle selecting active window.
control_tabs_remove_cb	Callback to handle removing a window.
cprop_input_cb	Change property to color by.
edge_size_cb	Callback to change the size of the edges.
filter_input_cb	Change predicate to be used to filter annotations.
fixed_layer_select_cb	Callback to handle toggling non-annotation layers on and off.
format_info	Format the slide info for display.
gather_ui_elements	Gather all the ui elements into a dict.
get_from_config	Helper to get a value from a config dict.
get_mapper_for_prop	Helper to get appropriate mapper for a property.
get_view_bounds	Helper to get the current view bounds.
handle_graph_layer	Handle adding a graph layer.
hex2rgb	Covert hex rgb string to float rgb(a) tuple.
initialise_overlay	Initialise the newly selected overlay.
initialise_slide	Initialise the newly selected slide.
layer_drop_cb	Set up the newly chosen overlay.
layer_select_cb	Callback to handle toggling specific annotation types on and off.
layer_slider_cb	Callback to handle changing the alpha of a layer.
make_color_dict	Helper to make a color dict from a list of types.
make_color_seq_from_cmap	Helper to make a color sequence from a colormap.
make_safe_name	Helper to make a name safe for use in a URL.
make_ts	Helper to make a tile source.
make_window	Make a new window for a slide.
model_drop_cb	Callback to handle model selection.
name2type	Helper to get original type from stringified version.
node_select_cb	Placeholder callback to do something on node selection.
opt_buttons_cb	Callback to handle options changes in the ui widget.
overlay_alpha_cb	Callback to change the alpha of all overlay layers.
overlay_toggle_cb	Callback to toggle the overlay on/off.
populate_layer_list	Populate the layer list with the available overlays.
populate_slide_list	Populate the slide list with the available slides.
pt_size_cb	Callback to change the size of the points.
res_switch_cb	Callback to switch between resolutions.
rgb2hex	Covert float rgb(a) tuple to hex string.
save_cb	Callback to handle saving annotations.
scale_spinner_cb	Callback to change the max scale.
segment_on_box	Callback to run hovernet on a region of the slide.
set_alpha_glyph	Set the fill and line alpha for a glyph.
setup_config_ui_settings	Set up the UI settings from the config file.
slide_alpha_cb	Callback to change the alpha of the slide.
slide_select_cb	Set up the newly chosen slide.
slide_toggle_cb	Callback to toggle the slide on/off.
tap_event_cb	Callback to handle double tap events to inspect annotations.
to_float_rgb	Helper to convert from int to float rgb(a) tuple.
to_int_rgb	Helper to convert from float to int rgb(a) tuple.
to_model_cb	Callback to run currently selected model.
to_num	Convert a str representation of a number to a numerical value.
type_cmap_cb	Callback to handle changing a type-specific color property.
update	Callback to ensure tiles are updated when needed.
update_mapper	Helper to update the color mapper.
update_renderer	Helper to update a renderer property.
update_ui_on_new_annotations	Update the UI when new annotations are added.

Classes

ColorCycler	Class to cycle through a list of colors.
DocConfig	class to configure and set up a document.
DummyAttr	Dummy class to enable triggering a callback independently of a widget.
TileGroup	Class to keep track of the current tile group.
UIWrapper	Wrapper class to access ui elements.
ViewerState	Class to keep track of the current state of the viewer.