wsireader¶

tiatoolbox . wsicore . wsireader

This module defines classes which can read image data from WSI formats.

Functions

`is_dicom`	Check if the input is a DICOM file.
`is_ngff`	Check if the input is an NGFF file.
`is_tiled_tiff`	Check if the input is a tiled TIFF file.
`is_zarr`	Check if the input is a Zarr file.

Classes

`AnnotationStoreReader`	Reader for Annotation stores.
`ArrayView`	An object for viewing a zarr array with a different index ordering.
`DICOMWSIReader`	Define DICOM WSI Reader.
`FsspecJsonWSIReader`	Reader for fsspec zarr json generated by: tiatoolbox/utils/tiff_to_fsspec.py.
`JP2WSIReader`	Class for reading Omnyx JP2 images.
`NGFFWSIReader`	Reader for NGFF WSI zarr(s).
`OpenSlideWSIReader`	Reader for OpenSlide supported whole-slide images.
`TIFFWSIReader`	Define Tiff WSI Reader.
`TIFFWSIReaderDelegate`	Delegate class to handle image reading operations.
`VirtualWSIReader`	Class for reading non-pyramidal images e.g., visual fields.
`WSIReader`	Base whole slide image (WSI) reader class.