Welcome to TIA Toolbox’s documentation!

• Readme
  • All Users
  • Developers
  • Links, if needed
  • Examples Taster
  • Install Python package
  • Command Line
  • Prepare for development
  • License
  • Cite this repository
• Installation
  • Prerequisites
  • Installing Stable Release
  • Alternative Method(s)
• Usage
  • Reading WSI Image Data
  • Accessing Metadata
  • Functional
  • Stain Extraction
  • Stain Normalization
  • Tissue Masking
  • Stain Augmentation
  • Patch Extraction
  • Graph Construction
  • Tile Pyramid Generation
  • Dataset
  • Deep Learning Models
  • Utilities
• Pre-trained Models
  • Patch Classification
  • Semantic Segmentation
  • Nucleus Instance Segmentation
  • Nucleus Detection
  • Multi-Task Segmentation
• Jupyter Notebooks
  • About the Example Notebooks
  • Basic Functionalities
  • Pipelines
• Algorithms
  • IDaRS Theory
• Visualization
  • 1. Launching the interface
  • 2. General UI Controls and Options
  • 3. Data Format Conventions and File Structure
  • 4. Annotation Store examples
  • 5. Config files
• API Reference
  • read_registry_files
  • DuplicateFilter
  • annotation
  • cli
  • data
  • enums
  • models
  • tiatoolbox
  • tools
  • typing
  • utils
  • visualization
  • wsicore
• Contributing
  • Types of Contributions
  • Get Started!
  • Pull Request Guidelines
  • Tips
  • Deploying
• Authors
  • Development Lead
  • Contributors
• History
  • 1.5.1 (2023-12-16)
  • 1.5.0 (2023-12-15)
  • 1.4.1 (2023-07-25)
  • 1.4.0 (2023-04-24)
  • 1.3.3 (2023-03-02)
  • 1.3.2 (2023-02-17)
  • 1.3.1 (2022-12-20)
  • 1.3.0 (2022-10-20)
  • 1.2.1 (2022-07-07)
  • 1.2.0 (2022-07-05)
  • 1.1.0 (2022-05-07)
  • 1.0.1 (2022-01-31)
  • 1.0.0 (2021-12-23)
  • 0.8.0 (2021-10-27)
  • 0.7.0 (2021-09-16)
  • 0.6.0 (2021-05-11)
  • 0.5.2 (2021-03-12)
  • 0.5.1 (2020-12-31)
  • 0.5.0 (2020-12-30)
  • 0.4.0 (2020-10-25)
  • 0.3.0 (2020-07-19)
  • 0.2.2 (2020-07-12)
  • 0.2.1 (2020-07-10)
  • 0.2.0 (2020-07-10)
  • 0.1.0 (2020-05-28)