prepare_model_cli

prepare_model_cli(img_input, output_path, masks, file_types, mode)[source]

Prepares cli for running models.

Checks for existing directories to run tests. Converts file path to list of file paths or creates list of file paths if input is a directory.

Parameters

  • img_input (str or pathlib.Path) – file path to images.

  • output_path (str or pathlib.Path) – output directory path.

  • masks (str or pathlib.Path) – file path to masks.

  • file_types (str) – file types to process using cli.

  • mode (str) – wsi or tile mode.

Returns

list of file paths to process. masks_all (list): list of masks corresponding to input files. output_path (pathlib.Path): output path

Return type

files_all (list)