Welcome to TIA Toolbox’s documentation!

• Readme
  • All Users
  • Developers
  • Links, if needed
  • Examples Taster
  • Install Python package
  • Command Line
  • Prepare for development
  • License
  • Auxiliary Files
  • Dual License
• Installation
  • Prerequisites
  • Stable release
  • From sources

• Usage
  • Reading WSI Image Data
  • Accessing Metadata
  • Functional
  • Stain Extraction
  • Stain Normalization
  • Tissue Masking
  • Stain Augmentation
  • Patch Extraction
  • Graph Construction
  • Tile Pyramid Generation
  • Dataset
  • Deep Learning Models
  • Utilities

• Pre-trained Models
  • Patch Classification
  • Semantic Segmentation
  • Nucleus Instance Segmentation
  • Multi-Task Segmentation
• Jupyter Notebooks
  • Module Tutorial
  • Full Pipelines
  • Inference Pipelines