misc

tiatoolbox . utils . misc

Miscellaneous small functions repeatedly used in tiatoolbox.

Functions

assert_dtype_int	Generate error if dtype is not int.
contrast_enhancer	Enhancing contrast of the input image using intensity adjustment.
download_data	Download data from a given URL to location.
get_bounding_box	Get bounding box coordinate information.
get_luminosity_tissue_mask	Get tissue mask based on the luminosity of the input image.
grab_files_from_dir	Grab file paths specified by file extensions.
imread	Read an image as numpy array.
imwrite	Write numpy array to an image.
load_stain_matrix	Load a stain matrix as a numpy array.
model_to	Transfers model to cpu/gpu.
parse_cv2_interpolaton	Convert a string to a OpenCV (cv2) interpolation enum.
prepare_file_dir_cli	Prepares CLI for running code on multiple files or a directory.
prepare_model_cli	Prepares cli for running models.
read_locations	Read annotations as pandas DataFrame.
save_as_json	Save data to a json file.
save_yaml	Save dictionary as yaml.
select_device	Selects the appropriate device as requested.
split_path_name_ext	Split path of a file to directory path, file name and extensions.
string_to_tuple	Splits input string to tuple at ','.
unzip_data	Extract data from zip file.