toolsΒΆ

This package contains various tools for working with WSIs.

tiatoolbox.tools.graph

Construction and visualisation of graphs for WSI prediction.

tiatoolbox.tools.patchextraction

This file defines patch extraction methods for deep learning models.

tiatoolbox.tools.pyramid

Tile pyrmaid generation in standard formats.

tiatoolbox.tools.scale

Scaler for transforming input.

tiatoolbox.tools.stainaugment

Stain augmentation

tiatoolbox.tools.stainextract

Stain matrix extraction for stain normalization.

tiatoolbox.tools.stainnorm

Stain normalization classes.

tiatoolbox.tools.tissuemask

Methods of masking tissue and background.