cli

tiatoolbox . cli

Console script for tiatoolbox.

Functions

version_msg

Return a string with tiatoolbox package version and python version.

tiatoolbox.cli.nucleus_instance_segment	Process an image/directory of input images with a patch classification CNN.
tiatoolbox.cli.patch_predictor	Process an image/directory of input images with a patch classification CNN.
tiatoolbox.cli.read_bounds	Read a region in an whole slide image as specified.
tiatoolbox.cli.save_tiles	Display or save WSI metadata.
tiatoolbox.cli.semantic_segment	Process an image/directory of input images with a patch classification CNN.
tiatoolbox.cli.slide_info	Display or save WSI metadata.
tiatoolbox.cli.slide_thumbnail	Read whole slide image thumbnail.
tiatoolbox.cli.stain_norm	Stain normalize an input image/directory of input images.
tiatoolbox.cli.tissue_mask	Generate tissue mask for a WSI.