save_tiles#
- save_tiles(input_path, output_dir='tiles', tile_objective_value=20, tile_read_size=(5000, 5000), verbose=True)[source]#
Save image tiles for whole slide image.
Default file format for tiles is jpg.
- Parameters:
input_path (str or pathlib.Path) – Path to whole slide image
output_dir (str or pathlib.Path) – Path to output directory to save the output
tile_objective_value (int) – objective value at which tile is generated, default=20.
tile_read_size (tuple(int)) – Tile (width, height), default=(5000, 5000).
verbose (bool) – Print output, default=True
Examples
>>> from tiatoolbox.wsicore.save_tiles import save_tiles >>> from tiatoolbox.utils import misc >>> file_types = ("*.ndpi", "*.svs", "*.mrxs", "*.jp2") >>> files_all = misc.grab_files_from_dir(input_path, ... file_types=file_types) >>> for curr_file in files_all: ... save_tiles(input_path=curr_file, ... output_dir="tiles", ... tile_objective_value=10, ... tile_read_size = (5000,5000))