Source code for tiatoolbox.wsicore.slide_info
"""Get Slide Meta Data information."""
import pathlib
from tiatoolbox.wsicore.wsireader import WSIReader
[docs]def slide_info(input_path, verbose=True):
"""Return WSI meta data.
Args:
input_path (str or pathlib.Path):
Path to whole slide image.
verbose (bool):
Print output, default=True.
Returns:
WSIMeta:
Metadata information.
Examples:
>>> from tiatoolbox.wsicore.slide_info import slide_info
>>> from tiatoolbox import utils
>>> file_types = ("*.ndpi", "*.svs", "*.mrxs", "*.jp2")
>>> files_all = utils.misc.grab_files_from_dir(input_path,
... file_types=file_types)
>>> for curr_file in files_all:
... slide_param = slide_info(input_path=curr_file)
... utils.misc.save_yaml(slide_param.as_dict(),
... str(slide_param.file_path) + ".yaml")
... print(slide_param.as_dict())
"""
input_path = pathlib.Path(input_path)
if verbose:
print(input_path.name, flush=True)
wsi = WSIReader.open(input_img=input_path)
info = wsi.info
if verbose:
print(info.as_dict())
return info